mRNA Single Sample Gene Expression workflow enables quantitative analysis of expressed genes in your samples from your RNA-seq data. Downstream analysis such as GO and KEGG-pathway analysis can be performed on the set of interesting genes. In this workflow, parameters can also be optimized depending on datasets and analysis needs. State-of-the-art publication-quality visualization and reports of your analysis results can be easily downloaded in the form of tables, images and html.

Pipeline

Import Sample (FASTQ | SRA) Cleaned (FASTQ) QC Reports Map to Reference (BAM) QC Reports BAM Processing (Cleaned BAM) QC Reports Estimate Transcript GTF Compare Transcript GTF Project Reports

Supported Organisms

1

Homo sapiens

2

Mus musculus

Reports

Turn your complex genomic data into a meaningful report of actionable information and insightful visualizations.
Reports are highly customizable and exportable in industry-class formats.

Splice Junction

Displaying Putative Splice Sites Around Donor

Junction Analysis

Displaying AT-AS Events

FPKM Distribution

Gene density plot

volcano plot

Read Duplication Summary

Reads Genomic Origin

Pre-filter Coverage Profile (Low)